#include <gnRNASequence.h>
Inheritance diagram for gnRNASequence:
Public Member Functions | |
gnRNASequence (const gnRNASequence &seq) | |
Copies the gnRNASequence "seq". | |
gnRNASequence (gnSeqC *bases, const gnSeqI length) | |
Creates a gnRNASequence with a single contig containing the bases in "bases". | |
gnRNASequence (const gnContigSpec &gncs) | |
Creates a gnRNASequence with the contigs stored in "gncs". | |
gnRNASequence (const gnFragmentSpec &gnfs) | |
Creates a gnRNASequence with the contigs stored in "gnfs". | |
gnRNASequence (const gnGenomeSpec &gngs) | |
Creates a gnRNASequence with the contigs stored in "gngs". | |
gnRNASequence (const string &str) | |
Creates a gnRNASequence with a single contig containing the bases in "str". | |
gnRNASequence (const gnSeqC *seq) | |
Creates a gnRNASequence with a single contig containing the bases in "seq". | |
gnRNASequence () | |
Empty Constructor, creates an empty gnRNASequence. | |
Private Attributes | |
const gnCompare * | comparator |
list< const gnBaseFilter * > | filter_list |
gnGenomeSpec * | spec |
Definition at line 28 of file gnRNASequence.h.
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Empty Constructor, creates an empty gnRNASequence. Definition at line 78 of file gnRNASequence.h. References comparator, filter_list, and gnCompare::RNASeqCompare(). |
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Creates a gnRNASequence with a single contig containing the bases in "seq".
References comparator, filter_list, gnSeqC, and gnCompare::RNASeqCompare(). |
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Creates a gnRNASequence with a single contig containing the bases in "str".
References comparator, filter_list, and gnCompare::RNASeqCompare(). |
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Creates a gnRNASequence with the contigs stored in "gngs".
References comparator, filter_list, and gnCompare::RNASeqCompare(). |
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Creates a gnRNASequence with the contigs stored in "gnfs".
References comparator, filter_list, and gnCompare::RNASeqCompare(). |
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Creates a gnRNASequence with the contigs stored in "gncs".
References comparator, filter_list, and gnCompare::RNASeqCompare(). |
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Creates a gnRNASequence with a single contig containing the bases in "bases".
References comparator, filter_list, gnSeqC, gnSeqI, and gnCompare::RNASeqCompare(). |
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Copies the gnRNASequence "seq".
References comparator, filter_list, and gnCompare::RNASeqCompare(). |
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Reimplemented from gnSequence. Definition at line 74 of file gnRNASequence.h. Referenced by gnRNASequence(). |
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Reimplemented from gnSequence. Definition at line 73 of file gnRNASequence.h. Referenced by gnRNASequence(). |
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Reimplemented from gnSequence. Definition at line 72 of file gnRNASequence.h. |