#include "gn/gnSequence.h"
#include <iostream>
#include <fstream>
#include <algorithm>
Include dependency graph for coordMapper.cpp:
Go to the source code of this file.
Classes | |
struct | ExMem |
Functions | |
boolean | ExMemLessthan (const ExMem &a, const ExMem &b) |
void | load_map_file (string &filename, vector< gnLocation > &loc_list) |
uint32 | loc_binary_search (vector< gnLocation > &loc_list, uint32 startI, uint32 endI, gnLocation &query_loc) |
boolean | LocationEndLessthan (const gnLocation &a, const gnLocation &b) |
boolean | LocationLessthan (const gnLocation &a, const gnLocation &b) |
boolean | LocationSizeLessthan (const gnLocation &a, const gnLocation &b) |
int | main (int argc, char *argv[]) |
void | map_coordinates (vector< gnLocation > &loc_list, vector< gnLocation > &map_list) |
void | map_list_coordinates (list< gnLocation > &loc_list, list< gnLocation > &map_list) |
void | print_feature (ostream &os, gnBaseFeature *cur_feat) |
void | print_usage (char *pname) |
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Definition at line 31 of file coordMapper.cpp. References ExMem::ex_start, ExMem::in_start, and ExMem::length. Referenced by main(). |
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Definition at line 45 of file coordMapper.cpp. References gnSeqI. Referenced by main(). |
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Definition at line 93 of file coordMapper.cpp. References gnLocation::GetStart(), and uint32. Referenced by main(). |
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Definition at line 21 of file coordMapper.cpp. References gnLocation::GetEnd(), and gnLocation::GetStart(). |
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Definition at line 15 of file coordMapper.cpp. References gnLocation::GetStart(). |
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Definition at line 27 of file coordMapper.cpp. References gnLocation::GetEnd(), and gnLocation::GetStart(). |
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Definition at line 106 of file coordMapper.cpp. References ExMem::ex_start, ExMemLessthan(), gnSequence::getIntersectingFeatures(), gnSeqI, ExMem::in_start, int64, ExMem::length, gnSequence::length(), load_map_file(), gnSequence::LoadSource(), loc_binary_search(), map_coordinates(), print_feature(), print_usage(), and uint32. |
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Definition at line 64 of file coordMapper.cpp. References gnSeqI, and uint32. Referenced by main(). |
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Definition at line 74 of file coordMapper.cpp. References gnSeqI. |
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Definition at line 85 of file coordMapper.cpp. References gnBaseFeature::GetName(), gnBaseFeature::GetQualifierListLength(), gnBaseFeature::GetQualifierName(), gnBaseFeature::GetQualifierValue(), and uint32. Referenced by main(). |
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Definition at line 41 of file coordMapper.cpp. |