gnContigSpec Member List

This is the complete list of members for gnContigSpec, including all inherited members.

Clear()gnContigSpec [virtual]
Clone() const =0gnContigSpec [pure virtual]
CloneRange(const gnSeqI startI, const gnSeqI len) const =0gnContigSpec [pure virtual]
CropEnd(gnSeqI cropLen)gnContigSpec [virtual]
CropStart(gnSeqI cropLen)gnContigSpec [virtual]
GetLength() constgnContigSpec [inline, virtual]
GetName() constgnBaseSpec [inline, virtual]
GetSourceContigIndex() constgnContigSpec [inline, virtual]
GetSourceLength() const =0gnContigSpec [pure virtual]
GetSourceName() constgnContigSpec [inline, virtual]
GetStart() constgnContigSpec [inline, virtual]
gnBaseSpec()gnBaseSpec [inline]
gnClone()gnClone [inline]
gnContigSpec()gnContigSpec [inline]
IsCircular() constgnBaseSpec [inline, virtual]
IsReverseComplement() constgnBaseSpec [inline, virtual]
m_circulargnBaseSpec [protected]
m_lengthgnContigSpec [protected]
m_namegnBaseSpec [protected]
m_reverseComplementgnBaseSpec [protected]
m_SourceContigIndexgnContigSpec [protected]
m_sourceNamegnBaseSpec [protected]
m_startgnContigSpec [protected]
Read(const gnSeqI start, gnSeqC *buf, gnSeqI &bufLen) const =0gnContigSpec [protected, pure virtual]
SeqRead(const gnSeqI start, gnSeqC *buf, gnSeqI &bufLen, const uint32 contigI) constgnContigSpec [virtual]
SetCircular(const boolean value)gnBaseSpec [inline, virtual]
SetLength(const gnSeqI len)gnContigSpec [inline, virtual]
SetName(const string &name)gnBaseSpec [inline, virtual]
SetReverseComplement(const boolean value)gnContigSpec [virtual]
SetSourceContigIndex(const uint32 contigI)gnContigSpec [inline, virtual]
SetSourceName(const string &sourceName)gnContigSpec [inline, virtual]
SetStart(const gnSeqI start)gnContigSpec [inline, virtual]
~gnBaseSpec()gnBaseSpec [inline, virtual]
~gnClone()gnClone [inline, virtual]
~gnContigSpec()gnContigSpec [inline, virtual]


Generated on Mon Feb 14 19:29:48 2005 for libGenome by doxygen 1.3.8