#include <gnDNASequence.h>
Inheritance diagram for gnDNASequence:
Public Member Functions | |
gnDNASequence (const gnDNASequence &seq) | |
Copies the gnDNASequence "seq". | |
gnDNASequence (gnSeqC *bases, const gnSeqI length) | |
Creates a gnDNASequence with a single contig containing the bases in "bases". | |
gnDNASequence (const gnContigSpec &gncs) | |
Creates a gnDNASequence with the contigs stored in "gncs". | |
gnDNASequence (const gnFragmentSpec &gnfs) | |
Creates a gnDNASequence with the contigs stored in "gnfs". | |
gnDNASequence (const gnGenomeSpec &gngs) | |
Creates a gnDNASequence with the contigs stored in "gngs". | |
gnDNASequence (const string &str) | |
Creates a gnDNASequence with a single contig containing the bases in "str". | |
gnDNASequence (const gnSeqC *seq) | |
Creates a gnDNASequence with a single contig containing the bases in "seq". | |
gnDNASequence () | |
Empty Constructor, creates an empty gnDNASequence. | |
Private Attributes | |
const gnCompare * | comparator |
list< const gnBaseFilter * > | filter_list |
gnGenomeSpec * | spec |
Definition at line 27 of file gnDNASequence.h.
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Empty Constructor, creates an empty gnDNASequence. Definition at line 77 of file gnDNASequence.h. References comparator, gnCompare::DNASeqCompare(), and filter_list. |
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Creates a gnDNASequence with a single contig containing the bases in "seq".
References comparator, gnCompare::DNASeqCompare(), filter_list, and gnSeqC. |
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Creates a gnDNASequence with a single contig containing the bases in "str".
References comparator, gnCompare::DNASeqCompare(), and filter_list. |
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Creates a gnDNASequence with the contigs stored in "gngs".
References comparator, gnCompare::DNASeqCompare(), and filter_list. |
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Creates a gnDNASequence with the contigs stored in "gnfs".
References comparator, gnCompare::DNASeqCompare(), and filter_list. |
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Creates a gnDNASequence with the contigs stored in "gncs".
References comparator, gnCompare::DNASeqCompare(), and filter_list. |
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Creates a gnDNASequence with a single contig containing the bases in "bases".
References comparator, gnCompare::DNASeqCompare(), filter_list, gnSeqC, and gnSeqI. |
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Copies the gnDNASequence "seq".
References comparator, gnCompare::DNASeqCompare(), and filter_list. |
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Reimplemented from gnSequence. Definition at line 73 of file gnDNASequence.h. Referenced by gnDNASequence(). |
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Reimplemented from gnSequence. Definition at line 72 of file gnDNASequence.h. Referenced by gnDNASequence(). |
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Reimplemented from gnSequence. Definition at line 71 of file gnDNASequence.h. |