gnGBKSource Member List

This is the complete list of members for gnGBKSource, including all inherited members.

Clone() constgnGBKSource [inline, virtual]
Close()gnFileSource [virtual]
DetermineNewlineType()gnFileSource [protected]
Filler(uint32 length)gnGBKSource [private, static]
FormatString(string &data, uint32 offset, uint32 width)gnGBKSource [private, static]
GetContigID(const string &name) constgnGBKSource [virtual]
GetContigListLength() constgnGBKSource [inline, virtual]
GetContigName(const uint32 i) constgnGBKSource [virtual]
GetContigSeqLength(const uint32 i) constgnGBKSource [virtual]
GetFileContig(const uint32 contigI) constgnGBKSource [virtual]
GetFilter() constgnFileSource [inline, virtual]
GetOpenString() constgnFileSource [inline, virtual]
GetSpec() constgnGBKSource [inline, virtual]
gnBaseSource()gnBaseSource [inline]
gnClone()gnClone [inline]
gnFileSource()gnFileSource [inline]
gnFileSource(const gnFileSource &gnfs)gnFileSource
gnGBKSource()gnGBKSource
gnGBKSource(const gnGBKSource &s)gnGBKSource
HasContig(const string &name) constgnGBKSource [virtual]
m_contigListgnGBKSource [private]
m_ifstreamgnFileSource [protected]
m_newlineSizegnFileSource [protected]
m_newlineTypegnFileSource [protected]
m_openStringgnFileSource [protected]
m_pFiltergnFileSource [protected]
m_specgnGBKSource [private]
Open(string openString)gnFileSource [virtual]
Open()gnFileSource [virtual]
ParseStream(istream &fin)gnGBKSource [private, virtual]
Read(const uint64 pos, char *buf, gnSeqI &bufLen)gnFileSource [virtual]
SeqRead(const gnSeqI start, char *buf, gnSeqI &bufLen, const uint32 contigI=ALL_CONTIGS)gnGBKSource [virtual]
SeqSeek(const gnSeqI start, const uint32 &contigI, uint64 &startPos, uint64 &readableBytes)gnGBKSource [private]
SeqStartPos(const gnSeqI start, gnFileContig &contig, uint64 &startPos, uint64 &readableBytes)gnGBKSource [private]
SetFilter(gnFilter *filter)gnFileSource [inline, virtual]
Write(gnSequence &seq, const string &filename)gnGBKSource [static]
Write(gnBaseSource *source, const string &filename)gnGBKSource [inline, static]
~gnBaseSource()gnBaseSource [inline, virtual]
~gnClone()gnClone [inline, virtual]
~gnFileSource()gnFileSource [inline, virtual]
~gnGBKSource()gnGBKSource


Generated on Mon Feb 14 19:29:53 2005 for libGenome by doxygen 1.3.8