#include <gnPosSpecificTranslator.h>
Inheritance diagram for gnPosSpecificTranslator:
Public Types | |
enum | gnTranslatorType { ProteinDNATranslatorType, DNAProteinTranslatorType } |
Public Member Functions | |
gnPosSpecificTranslator * | Clone () const |
virtual void | Filter (string &seq) const |
Filters the given string. | |
virtual void | Filter (gnSeqC **seq, gnSeqI &len) const |
Filter the given character array. | |
virtual gnSeqC | Filter (const gnSeqC ch) const |
Filter the given character. | |
gnPosSpecificTranslator (const gnPosSpecificTranslator &sf) | |
gnPosSpecificTranslator (gnTranslatorType t_type) | |
gnPosSpecificTranslator () | |
gnPosSpecificTranslator & | operator= (const gnPosSpecificTranslator &sf) |
Static Public Member Functions | |
const gnPosSpecificTranslator * | DNAProteinTranslator () |
const gnPosSpecificTranslator * | ProteinDNATranslator () |
Private Member Functions | |
void | CreateDNAProteinTranslator () |
void | CreateProteinDNATranslator () |
Private Attributes | |
const gnBaseFilter * | filter |
gnTranslatorType | m_type |
Useful for tranlating genes because the first codon is translated differently.
Definition at line 32 of file gnPosSpecificTranslator.h.
|
Definition at line 39 of file gnPosSpecificTranslator.h. |
|
Definition at line 28 of file gnPosSpecificTranslator.cpp. Referenced by DNAProteinTranslator(), and ProteinDNATranslator(). |
|
Definition at line 36 of file gnPosSpecificTranslator.cpp. References gnFastTranslator::DNAProteinTranslator(), DNAProteinTranslatorType, filter, m_type, gnFastTranslator::ProteinDNATranslator(), and ProteinDNATranslatorType. |
|
Definition at line 32 of file gnPosSpecificTranslator.cpp. References gnBaseFilter::m_name. |
|
Implements gnBaseFilter. Definition at line 67 of file gnPosSpecificTranslator.h. |
|
|
|
|
|
Definition at line 22 of file gnPosSpecificTranslator.cpp. References DNAProteinTranslatorType, and gnPosSpecificTranslator(). |
|
Filters the given string.
Implements gnBaseFilter. Definition at line 59 of file gnPosSpecificTranslator.cpp. References DNAProteinTranslatorType, gnBaseFilter::Filter(), filter, m_type, and ProteinDNATranslatorType. |
|
Filter the given character array.
Implements gnBaseFilter. Definition at line 55 of file gnPosSpecificTranslator.cpp. References gnBaseFilter::Filter(), filter, gnSeqC, and gnSeqI. |
|
Filter the given character.
Implements gnBaseFilter. Definition at line 51 of file gnPosSpecificTranslator.cpp. References gnBaseFilter::Filter(), filter, and gnSeqC. |
|
|
|
Definition at line 18 of file gnPosSpecificTranslator.cpp. References gnPosSpecificTranslator(), and ProteinDNATranslatorType. |
|
Definition at line 60 of file gnPosSpecificTranslator.h. Referenced by Filter(), and gnPosSpecificTranslator(). |
|
Definition at line 59 of file gnPosSpecificTranslator.h. Referenced by Filter(), and gnPosSpecificTranslator(). |