#include <gnProteinSequence.h>
Inheritance diagram for gnProteinSequence:
Public Member Functions | |
gnProteinSequence (const gnProteinSequence &seq) | |
Copies the gnProteinSequence "seq". | |
gnProteinSequence (gnSeqC *bases, const gnSeqI length) | |
Creates a gnProteinSequence with a single contig containing the bases in "bases". | |
gnProteinSequence (const gnContigSpec &gncs) | |
Creates a gnProteinSequence with the contigs stored in "gncs". | |
gnProteinSequence (const gnFragmentSpec &gnfs) | |
Creates a gnProteinSequence with the contigs stored in "gnfs". | |
gnProteinSequence (const gnGenomeSpec &gngs) | |
Creates a gnProteinSequence with the contigs stored in "gngs". | |
gnProteinSequence (const string &str) | |
Creates a gnProteinSequence with a single contig containing the bases in "str". | |
gnProteinSequence (const gnSeqC *seq) | |
Creates a gnProteinSequence with a single contig containing the bases in "seq". | |
gnProteinSequence () | |
Empty Constructor, creates an empty gnProteinSequence. | |
Private Attributes | |
const gnCompare * | comparator |
list< const gnBaseFilter * > | filter_list |
gnGenomeSpec * | spec |
Definition at line 28 of file gnProteinSequence.h.
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Empty Constructor, creates an empty gnProteinSequence. Definition at line 78 of file gnProteinSequence.h. References comparator, filter_list, and gnCompare::ProteinSeqCompare(). |
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Creates a gnProteinSequence with a single contig containing the bases in "seq".
References comparator, filter_list, gnSeqC, and gnCompare::ProteinSeqCompare(). |
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Creates a gnProteinSequence with a single contig containing the bases in "str".
References comparator, filter_list, and gnCompare::ProteinSeqCompare(). |
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Creates a gnProteinSequence with the contigs stored in "gngs".
References comparator, filter_list, and gnCompare::ProteinSeqCompare(). |
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Creates a gnProteinSequence with the contigs stored in "gnfs".
References comparator, filter_list, and gnCompare::ProteinSeqCompare(). |
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Creates a gnProteinSequence with the contigs stored in "gncs".
References comparator, filter_list, and gnCompare::ProteinSeqCompare(). |
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Creates a gnProteinSequence with a single contig containing the bases in "bases".
References comparator, filter_list, gnSeqC, gnSeqI, and gnCompare::ProteinSeqCompare(). |
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Copies the gnProteinSequence "seq".
References comparator, filter_list, and gnCompare::ProteinSeqCompare(). |
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Reimplemented from gnSequence. Definition at line 74 of file gnProteinSequence.h. Referenced by gnProteinSequence(). |
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Reimplemented from gnSequence. Definition at line 73 of file gnProteinSequence.h. Referenced by gnProteinSequence(). |
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Reimplemented from gnSequence. Definition at line 72 of file gnProteinSequence.h. |