gnABISource Member List

This is the complete list of members for gnABISource, including all inherited members.

Clone() constgnABISource [inline, virtual]
Close()gnFileSource [virtual]
DetermineNewlineType()gnFileSource [protected]
GetContig(const uint32 i) constgnABISource
GetContigID(const string &name) constgnABISource [virtual]
GetContigListLength() constgnABISource [inline, virtual]
GetContigName(uint32 i) constgnABISource [virtual]
GetContigSeqLength(uint32 i) constgnABISource [virtual]
GetFileContig(const uint32 contigI) constgnABISource [virtual]
GetFilter() constgnFileSource [inline, virtual]
GetOpenString() constgnFileSource [inline, virtual]
GetSpec() constgnABISource [inline, virtual]
gnABISource()gnABISource
gnABISource(const gnABISource &s)gnABISource
gnBaseSource()gnBaseSource [inline]
gnClone()gnClone [inline]
gnFileSource()gnFileSource [inline]
gnFileSource(const gnFileSource &gnfs)gnFileSource
HasContig(const string &name) constgnABISource [virtual]
m_contigListgnABISource [private]
m_ifstreamgnFileSource [protected]
m_newlineSizegnFileSource [protected]
m_newlineTypegnFileSource [protected]
m_openStringgnFileSource [protected]
m_pFiltergnFileSource [protected]
m_specgnABISource [private]
Open(string openString)gnFileSource [virtual]
Open()gnFileSource [virtual]
ParseStream(istream &fin)gnABISource [private, virtual]
Read(const uint64 pos, char *buf, gnSeqI &bufLen)gnFileSource [virtual]
SeqRead(const gnSeqI start, char *buf, gnSeqI &bufLen, const uint32 contigI=ALL_CONTIGS)gnABISource [virtual]
SeqSeek(const gnSeqI start, const uint32 &contigI, uint64 &startPos, uint64 &readableBytes)gnABISource [private]
SeqStartPos(const gnSeqI start, gnFileContig &contig, uint64 &startPos, uint64 &readableBytes)gnABISource [private]
SetFilter(gnFilter *filter)gnFileSource [inline, virtual]
Write(gnSequence &sequence, const string &filename)gnABISource [static]
~gnABISource()gnABISource
~gnBaseSource()gnBaseSource [inline, virtual]
~gnClone()gnClone [inline, virtual]
~gnFileSource()gnFileSource [inline, virtual]


Generated on Mon Feb 14 19:29:44 2005 for libGenome by doxygen 1.3.8