gnFileContig Member List

This is the complete list of members for gnFileContig, including all inherited members.

AddToSeqLength(const gnSeqI len)gnFileContig [inline]
Clear()gnFileContig
Clone() constgnFileContig [inline, virtual]
GetFileLength() constgnFileContig [inline]
GetFileStartEnd() constgnFileContig [inline]
GetName() constgnFileContig [inline]
GetRepeatSeqGapSize() constgnFileContig [inline]
GetSectLength(gnContigSection i) constgnFileContig [inline]
GetSectStartEnd(const gnContigSection i) constgnFileContig [inline]
GetSeqLength() constgnFileContig [inline]
gnClone()gnClone [inline]
gnFileContig()gnFileContig
gnFileContig(string nameStr, const uint64 pos, const uint64 len)gnFileContig
gnFileContig(const gnFileContig &fc)gnFileContig
HasRepeatSeqGap() constgnFileContig [inline]
m_fileStartEndgnFileContig [private]
m_namegnFileContig [private]
m_repeatSeqGapgnFileContig [private]
m_repeatSeqGapSizegnFileContig [private]
m_seqLengthgnFileContig [private]
m_startEndArraygnFileContig [private]
SetFileEnd(const uint64 e)gnFileContig [inline]
SetFileStart(const uint64 s)gnFileContig [inline]
SetFileStartEnd(const pair< uint64, uint64 > se)gnFileContig [inline]
SetName(string nameStr)gnFileContig [inline]
SetRepeatGapSize(const uint64 gapSize)gnFileContig
SetRepeatSeqGap(const boolean rsg)gnFileContig [inline]
SetRepeatSeqGapSize(const pair< uint64, uint64 > rsgSize)gnFileContig [inline]
SetRepeatSeqSize(const uint64 seqSize)gnFileContig
SetSectEnd(const gnContigSection i, const uint64 e)gnFileContig [inline]
SetSectStart(const gnContigSection i, const uint64 s)gnFileContig [inline]
SetSectStartEnd(const gnContigSection i, const pair< uint64, uint64 > se)gnFileContig [inline]
SetSeqLength(const gnSeqI len)gnFileContig [inline]
~gnClone()gnClone [inline, virtual]
~gnFileContig()gnFileContig


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