gnRAWSource Member List

This is the complete list of members for gnRAWSource, including all inherited members.

CheckRawData(boolean set=false, boolean check=false)gnRAWSource [inline, static]
Clone() constgnRAWSource [inline, virtual]
Close()gnFileSource [virtual]
DetermineNewlineType()gnFileSource [protected]
GetContigID(const string &name) constgnRAWSource [virtual]
GetContigListLength() constgnRAWSource [inline, virtual]
GetContigName(const uint32 i) constgnRAWSource [virtual]
GetContigSeqLength(const uint32 i) constgnRAWSource [virtual]
GetFileContig(const uint32 contigI) constgnRAWSource [virtual]
GetFilter() constgnFileSource [inline, virtual]
GetOpenString() constgnFileSource [inline, virtual]
GetSpec() constgnRAWSource [virtual]
gnBaseSource()gnBaseSource [inline]
gnClone()gnClone [inline]
gnFileSource()gnFileSource [inline]
gnFileSource(const gnFileSource &gnfs)gnFileSource
gnRAWSource()gnRAWSource
gnRAWSource(const gnRAWSource &s)gnRAWSource
HasContig(const string &name) constgnRAWSource [virtual]
m_contiggnRAWSource [private]
m_ifstreamgnFileSource [protected]
m_newlineSizegnFileSource [protected]
m_newlineTypegnFileSource [protected]
m_openStringgnFileSource [protected]
m_pFiltergnFileSource [protected]
m_specgnRAWSource [private]
Open(string openString)gnFileSource [virtual]
Open()gnFileSource [virtual]
ParseStream(istream &fin)gnRAWSource [private, virtual]
Read(const uint64 pos, char *buf, gnSeqI &bufLen)gnFileSource [virtual]
SeqRead(const gnSeqI start, char *buf, gnSeqI &bufLen, const uint32 contigI=ALL_CONTIGS)gnRAWSource [virtual]
SeqSeek(const gnSeqI start, const uint32 &contigI, uint64 &startPos, uint64 &readableBytes)gnRAWSource [private]
SeqStartPos(const gnSeqI start, gnFileContig &contig, uint64 &startPos, uint64 &readableBytes)gnRAWSource [private]
SetFilter(gnFilter *filter)gnFileSource [inline, virtual]
Write(gnSequence &sequence, const string &filename)gnRAWSource [static]
Write(gnBaseSource *source, const string &filename)gnRAWSource [inline, static]
~gnBaseSource()gnBaseSource [inline, virtual]
~gnClone()gnClone [inline, virtual]
~gnFileSource()gnFileSource [inline, virtual]
~gnRAWSource()gnRAWSource


Generated on Mon Feb 14 19:29:55 2005 for libGenome by doxygen 1.3.8