gnGenomeSpec Member List

This is the complete list of members for gnGenomeSpec, including all inherited members.

AddFeature(gnBaseFeature *feat)gnGenomeSpec [virtual]
AddHeader(gnBaseHeader *head, const uint32 i=UINT32_MAX)gnMultiSpec< gnFragmentSpec > [virtual]
AddSpec(gnFragmentSpec *spec, const uint32 i=UINT32_MAX)gnMultiSpec< gnFragmentSpec > [virtual]
Clear()gnGenomeSpec [virtual]
Clone() constgnGenomeSpec [inline, virtual]
CloneRange(const gnSeqI startI, const gnSeqI len) constgnGenomeSpec [virtual]
CropEnd(gnSeqI cropLen)gnMultiSpec< gnFragmentSpec > [virtual]
CropStart(gnSeqI cropLen)gnMultiSpec< gnFragmentSpec > [virtual]
GetBrokenFeatures(const gnLocation &lt, vector< gnBaseFeature * > &feature_vector) constgnGenomeSpec [virtual]
GetContainedFeatures(const gnLocation &lt, vector< gnBaseFeature * > &feature_vector, vector< uint32 > &index_vector) constgnGenomeSpec [virtual]
GetFeature(const uint32 i) constgnGenomeSpec [virtual]
GetFeatureListLength() constgnGenomeSpec [virtual]
GetHeader(const uint32 i) constgnMultiSpec< gnFragmentSpec > [virtual]
GetHeader(const string &name, uint32 &i) constgnMultiSpec< gnFragmentSpec > [virtual]
GetHeaderListLength() constgnMultiSpec< gnFragmentSpec > [virtual]
GetIntersectingFeatures(const gnLocation &lt, vector< gnBaseFeature * > &feature_vector, vector< uint32 > &index_vector) constgnGenomeSpec [virtual]
GetLength() constgnMultiSpec< gnFragmentSpec > [virtual]
GetName() constgnBaseSpec [inline, virtual]
GetSourceName() constgnMultiSpec< gnFragmentSpec > [virtual]
GetSpec(const uint32 i) constgnMultiSpec< gnFragmentSpec > [virtual]
GetSpecByBase(const gnSeqI baseI) constgnMultiSpec< gnFragmentSpec > [virtual]
GetSpecEndBase(const uint32 specI) constgnMultiSpec< gnFragmentSpec > [virtual]
GetSpecIndexByBase(const gnSeqI baseI) constgnMultiSpec< gnFragmentSpec > [virtual]
GetSpecIndexByName(const string &name) constgnMultiSpec< gnFragmentSpec > [virtual]
GetSpecListLength() constgnMultiSpec< gnFragmentSpec > [virtual]
GetSpecStartBase(const uint32 specI) constgnMultiSpec< gnFragmentSpec > [virtual]
gnBaseSpec()gnBaseSpec [inline]
gnClone()gnClone [inline]
gnGenomeSpec()gnGenomeSpec
gnGenomeSpec(const gnGenomeSpec &s)gnGenomeSpec
gnMultiSpec()gnMultiSpec< gnFragmentSpec > [inline]
IsCircular() constgnBaseSpec [inline, virtual]
IsReverseComplement() constgnBaseSpec [inline, virtual]
m_circulargnBaseSpec [protected]
m_headerListgnMultiSpec< gnFragmentSpec > [protected]
m_namegnBaseSpec [protected]
m_reverseComplementgnBaseSpec [protected]
m_sourceNamegnMultiSpec< gnFragmentSpec > [protected]
m_SpecListgnMultiSpec< gnFragmentSpec > [protected]
MergeFragments(const uint32 startC, const uint32 endC)gnGenomeSpec [virtual]
RemoveFeature(const uint32 i)gnGenomeSpec [virtual]
RemoveHeader(uint32 i)gnMultiSpec< gnFragmentSpec > [virtual]
RemoveSpec(uint32 i)gnMultiSpec< gnFragmentSpec > [virtual]
SeqRead(const gnSeqI start, gnSeqC *buf, gnSeqI &bufLen, const uint32 contigI) constgnMultiSpec< gnFragmentSpec > [virtual]
SetCircular(const boolean value)gnBaseSpec [inline, virtual]
SetName(const string &name)gnBaseSpec [inline, virtual]
SetReverseComplement(const boolean value)gnGenomeSpec [virtual]
SetSourceName(const string &sourceName)gnMultiSpec< gnFragmentSpec > [virtual]
~gnBaseSpec()gnBaseSpec [inline, virtual]
~gnClone()gnClone [inline, virtual]
~gnGenomeSpec()gnGenomeSpec [virtual]
~gnMultiSpec()gnMultiSpec< gnFragmentSpec > [inline, virtual]


Generated on Mon Feb 14 19:29:53 2005 for libGenome by doxygen 1.3.8