gnDataBaseSource Member List

This is the complete list of members for gnDataBaseSource, including all inherited members.

Clone() const =0gnDataBaseSource [pure virtual]
Clone() const =0gnDataBaseSource [pure virtual]
Close()=0gnDataBaseSource [pure virtual]
GetContigID(const string &name) const =0gnDataBaseSource [pure virtual]
GetContigListLength() const =0gnDataBaseSource [pure virtual]
GetContigName(const uint32 i) const =0gnDataBaseSource [pure virtual]
GetContigSeqLength(const uint32 i) const =0gnDataBaseSource [pure virtual]
GetFilter() const =0gnDataBaseSource [pure virtual]
GetOpenString() const =0gnDataBaseSource [pure virtual]
GetSpec() const =0gnDataBaseSource [pure virtual]
gnBaseSource()gnBaseSource [inline]
gnClone()gnClone [inline]
gnDataBaseSource()gnDataBaseSource [inline, private]
HasContig(const string &name) const =0gnDataBaseSource [pure virtual]
Open(string openString)=0gnDataBaseSource [pure virtual]
Open()=0gnDataBaseSource [pure virtual]
Read(const uint64 pos, char *buf, uint32 &bufLen)=0gnDataBaseSource [pure virtual]
gnBaseSource::Read(const uint64 pos, char *buf, gnSeqI &bufLen)=0gnBaseSource [pure virtual]
SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS)=0gnDataBaseSource [pure virtual]
gnBaseSource::SeqRead(const gnSeqI start, char *buf, gnSeqI &bufLen, const uint32 contigI=ALL_CONTIGS)=0gnBaseSource [pure virtual]
SetFilter(gnFilter *filter)=0gnDataBaseSource [pure virtual]
~gnBaseSource()gnBaseSource [inline, virtual]
~gnClone()gnClone [inline, virtual]
~gnDataBaseSourcee()gnDataBaseSource [inline, virtual]


Generated on Mon Feb 14 19:29:48 2005 for libGenome by doxygen 1.3.8