gnDNXSource Member List

This is the complete list of members for gnDNXSource, including all inherited members.

Clone() constgnDNXSource [inline, virtual]
Close()gnFileSource [virtual]
DetermineNewlineType()gnFileSource [protected]
GetContigID(const string &name) constgnDNXSource [virtual]
GetContigListLength() constgnDNXSource [inline, virtual]
GetContigName(const uint32 i) constgnDNXSource [virtual]
GetContigSeqLength(const uint32 i) constgnDNXSource [virtual]
GetFileContig(const uint32 contigI) constgnDNXSource [virtual]
GetFilter() constgnFileSource [inline, virtual]
GetOpenString() constgnFileSource [inline, virtual]
GetSpec() constgnDNXSource [inline, virtual]
gnBaseSource()gnBaseSource [inline]
gnClone()gnClone [inline]
gnDNXSource()gnDNXSource
gnDNXSource(const gnDNXSource &s)gnDNXSource
gnFileSource()gnFileSource [inline]
gnFileSource(const gnFileSource &gnfs)gnFileSource
HasContig(const string &name) constgnDNXSource [virtual]
m_DNXSpecgnDNXSource [private]
m_ifstreamgnFileSource [protected]
m_newlineSizegnFileSource [protected]
m_newlineTypegnFileSource [protected]
m_openStringgnFileSource [protected]
m_pFiltergnFileSource [protected]
Open(string openString)gnFileSource [virtual]
Open()gnFileSource [virtual]
ParseStream(istream &fin)gnDNXSource [private, virtual]
Read(const uint64 pos, char *buf, gnSeqI &bufLen)gnFileSource [virtual]
SeqRead(const gnSeqI start, char *buf, gnSeqI &bufLen, const uint32 contigI=ALL_CONTIGS)gnDNXSource [inline, virtual]
SetFilter(gnFilter *filter)gnFileSource [inline, virtual]
ValidateName(string &name)gnDNXSource [private, static]
Write(gnSequence &sequence, const string &filename)gnDNXSource [inline, static]
Write(gnBaseSource *source, const string &filename)gnDNXSource [inline, static]
Write(gnGenomeSpec *spec, const string &filename)gnDNXSource [static]
~gnBaseSource()gnBaseSource [inline, virtual]
~gnClone()gnClone [inline, virtual]
~gnDNXSource()gnDNXSource
~gnFileSource()gnFileSource [inline, virtual]


Generated on Mon Feb 14 19:29:49 2005 for libGenome by doxygen 1.3.8