Genome Evolution Laboratory - Mauve User Guide

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Mauve User Guide

A guide to using Mauve to construct genome alignments, including documentation of the graphical interface, configurable alignment parameters, and output file formats.

Introduction to Mauve

Installing Mauve

Constructing a Genome Alignment

Using the Alignment Viewer

Mauve Output File Formats

Reordering contigs in draft genomes

Using mauveAligner from the command-line

Using progressiveMauve from the command-line

Mauve Version History

Mauve screenshots

Mauve Developer Guide
Detailed information on how to develop Mauve, including compiler and deployment instructions for C++ and Java.
Other Mauve Information

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